ISSN 2415-3060 (print), ISSN 2522-4972 (online)
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УЖМБС 2022, 7(5): 82–89
https://doi.org/10.26693/jmbs07.05.082
Experimental Medicine and Morphology

Effects of Inbreeding on the Prevalence of Chromosomal Disorders among the Population of Sloboda Ukraine

Fedota О. М. 1, Sadovnychenko Yu. O. 2, Dorofieieva V. R. 1, Movchan N. V. 3, Danylchenko S. I. 4
Abstract

An increase in inbreeding level and advanced parental age are factors that increase the risk of having children with structural and numerical chromosomal abnormalities due to altered frequency of recombination and impaired behavior of chromosomes in meiosis. There is limited information on the effects of inbreeding on human chromosomal and genomic mutations. The purpose of the study was to assess the effect of inbreeding on the prevalence of chromosomal abnormalities in the districts of the Kharkiv region. Materials and methods. The study was conducted in four districts of the Kharkiv region – Balakliia, Vovchansk, Zmiiv, and Krasnograd (administrative and territorial structure is given as of July 1, 2020). Based on the data of analysis of 1,582 marriages between opposite-sex couples mean age at marriage, marital distance, and the random inbreeding coefficient (FST) were estimated. Of 654 children (aged 0–17 years) included in the study, 39 had chromosomal disorders that was the basis for the calculation of the prevalence of chromosomal abnormalities. Results and discussion. In four districts, the mean age at marriage for local residents was 27.8 ± 0.1 years. Men were 2.9 years older than women at marriage. The marital distance was 320.4 ± 28.4 km, varying from 263.17 ± 48.39 km in the Balakliia district to 400.12 ± 79.97 km in the Vovchansk district. The random inbreeding coefficient FST was 0.001292. In rural settlements, the random inbreeding coefficient FST was by 17.2 times higher than in urban settlements. The index rose by 80 percent over the last seven years. The prevalence of chromosomal pathology among children and adolescents was 0.08%, ranging from 0.05% in the Vovchansk district to 0.14% in the Krasnograd district. Among the cases included, there were patients with Down syndrome, Klinefelter syndrome, Turner syndrome, and Prader-Willi syndrome. The most common nosological entity was Down syndrome. The prevalence of chromosomal abnormalities in villages was by 2.6 times higher than in towns. A strong positive relationship was established between the random inbreeding coefficients FST and the prevalence of chromosomal disorders in the study area (r = 0.904). Conclusion. Almost two-fold increase in the inbreeding rate in the mentioned districts in just past seven years may contribute to accumulation of burden of chromosomal disorders of the population due to the presence of a positive correlation between the study population indicators

Keywords: random inbreeding coefficient, chromosomal abnormality, prevalence of genetic disorders

Full text: PDF (Ukr) 330K

References
  1. Moorthie S, Blencowe H, Darlison MW, Gibbons S, Lawn JE, Mastroiacovo P, et al. Chromosomal disorders: estimating baseline birth prevalence and pregnancy outcomes worldwide. J Community Genet. 2018 Oct;9(4):377–386. PMID: 28948513. PMCID: PMC6167258. https://doi.org/10.1007/s12687-017-0336-2
  2. Zhang XH, Qiu LQ, Ye YH, Xu J. Chromosomal abnormalities: subgroup analysis by maternal age and perinatal features in Zhejiang province of China, 2011–2015. Ital J Pediatr. 2017 May 12;43(1):47. PMID: 28499441. PMCID: PMC5429550. https://doi.org/10.1186/s13052-017-0363-y
  3. Wellesley D, Dolk H, Boyd PA, Greenlees R, Haeusler M, Nelen V, et al. Rare chromosome abnormalities, prevalence and prenatal diagnosis rates from population-based congenital anomaly registers in Europe. Eur J Hum Genet. 2012 May;20(5):521–526. PMID: 22234154. PMCID: PMC3330224. https://doi.org/10.1038/ejhg.2011.246
  4. Protsyuk OV, Lynchak OV, Pokanevich TM Prevalence of chromosomal abnormalities among live births and stillbirths in Ukraine. Obstetrics. Gynecology. Genetics. 2017;3:37–41. [Ukrainian]
  5. Peters BA, Kermani BG, Alferov O, Agarwal MR, McElwain MA, Gulbahce N, et al. Detection and phasing of single base de novo mutations in biopsies from human in vitro fertilized embryos by advanced whole-genome sequencing. Genome Res. 2015 Mar;25(3):426–434. PMID: 25672852. PMCID: PMC4352880. https://doi.org/10.1101/gr.181255.114
  6. Liu L, Lu Y, Zhang P, Sun Y, Li Y, Ma C, et al. The Risk of Advanced Maternal Age: Causes and Overview. J Gynecol Res Obstet. 2020 May 5;6(2):019–023. https://doi.org/10.17352/jgro.000080
  7. Yatsenko AN, Turek PJ. Reproductive genetics and the aging male. J Assist Reprod Genet. 2018 Jun;35(6):933–941. PMID: 29524155. PMCID: PMC6030011. https://doi.org/10.1007/s10815-018-1148-y
  8. Fedota OM, Lysenko NG, Ruban SY, Kolisnyk OI, Goraychuk IV. The effects of polymorphisms in growth hormone and growth hormone receptor genes on production and reproduction traits in aberdeen-angus cattle (Bos taurus L., 1758). Cytol Genet. 2017 Oct 1;51(5):38–49. doi:10.3103/S0095452717050024
  9. Curik I, Ferenčaković M, Sölkner J. Genomic dissection of inbreeding depression: a gate to new opportunities. R Bras Zootec. 2017 Sep;46(9):773–782. https://doi.org/10.1590/S1806-92902017000900010
  10. Mateu-Brull E, Rodrigo L, Peinado V, Mercader A, Campos-Galindo I, Bronet F, et al. Interchromosomal effect in carriers of translocations and inversions assessed by preimplantation genetic testing for structural rearrangements (PGT-SR). J Assist Reprod Genet. 2019 Dec;36(12):2547–2555. PMID: 31696386. PMCID: PMC6911137. https://doi.org/10.1007/s10815-019-01593-9
  11. Aristidou C, Koufaris C, Theodosiou A, Bak M, Mehrjouy MM, Behjati F, et al. Accurate breakpoint mapping in apparently balanced translocation families with discordant phenotypes using whole genome mate-pair sequencing. PLoS One. 2017 Jan 19;12(1):e0169935. PMID: 28072833. PMCID: PMC5225008. https://doi.org/10.1371/journal.pone.0169935
  12. Wilch ES, Morton CC. Historical and clinical perspectives on chromosomal translocations. Adv Exp Med Biol. 2018;1044:1–14. PMID: 29956287. https://doi.org/10.1007/978-981-13-0593-1_1
  13. Zhang H, Wang R, Li L, Jiang Y, Zhang H, Liu R. Clinical feature of infertile men carrying balanced translocations involving chromosome 10: Case series and a review of the literature. Medicine (Baltimore). 2018 Apr;97(15):e0452. PMID: 29642220. PMCID: PMC5908604. https://doi.org/10.1097/MD.0000000000010452
  14. Tšuіkо О, Dmіtrіjеvа T, Каsк К, Tаmmur Р, Tõnіssоn N, Sаlumеts А, et al. Detection of a balanced translocation carrier through trophectoderm biopsy analysis: a case report. Mol Cytogenet. 2019 Jun 18;12:28. PMID: 31244893. PMCID: PMC6582470. https://doi.org/10.1186/s13039-019-0444-2
  15. ESHRE PGT Consortium Steering Committee, Carvalho F, Coonen E, Goossens V, Kokkali G, Rubio C, et al. ESHRE PGT Consortium good practice 136 recommendations for the organisation of PGT. Hum Reprod Open. 2020 May 29;2020(3):hoaa021. PMID: 32524036. PMCID: PMC7257038. https://doi.org/10.1093/hropen/hoaa021
  16. De Rycke M, Berckmoes V. Preimplantation Genetic Testing for Monogenic Disorders. Genes (Basel). 2020 Jul 31;11(8):871. PMID: 32752000. PMCID: PMC7463885. https://doi.org/10.3390/genes11080871
  17. Shawky RM, Elsayed SM, Zaki ME, Nour El-Din SM, Kamal FM. Consanguinity and its relevance to clinical genetics. Egypt J Med Hum Genet. 2013 Apr;14(2):157–164. https://doi.org/10.1016/j.ejmhg.2013.01.002
  18. Zlotogora J, Shalev SA. The consequences of consanguinity on the rates of malformations and major medical conditions at birth and in early childhood in inbred populations. Am J Med Genet A. 2010 Aug;152A(8):2023–2028. PMID: 20635393. https://doi.org/10.1002/ajmg.a.33537
  19. Marchi N, Mennecier P, Georges M, Lafosse S, Hegay T, Dorzhu C, et al. Close inbreeding and low genetic diversity in Inner Asian human populations despite geographical exogamy. Sci Rep. 2018 Jun 20;8(1):9397. PMID: 29925873. PMCID: PMC6010435. https://doi.org/10.1038/s41598-018-27047-3
  20. State Statistics Service of Ukraine [internet]. Available from: http://ukrstat.gov.ua
  21. Cavalli-Sforza LL, Bodmer WF. The Genetics of Human Populations. Mineola, New York, USA: Dover Publications; 2013.
  22. Atramentova LO, Utevska ОM. Statistical methods in biology. Kharkiv: VN Karazin Kharkiv National University; 2007. [Ukrainian]
  23. Fareed M, Afzal M. Genetics of consanguinity and inbreeding in health and disease. Ann Hum Biol. 2017 Mar;44(2):99–107. PMID: 27892699. https://doi.org/10.1080/03014460.2016.1265148
  24. Bewley S, Davies M, Braude P. Which career first? The most secure age for childbearing remains 20–35. BMJ. 2005 Sep 17;331(7517):588–589. PMID: 16166111. PMCID: PMC1215541. https://doi.org/10.1136/bmj.331.7517.588
  25. Mykytenko DO, Lynchak OV, Tymchenko OI. Genetic load in ukrainian population: congenital and hereditary disorders. Health of Woman. 2012;10(76):17–21. [Ukrainian]
  26. de Graaf G, Buckley F, Skotko BJ. Estimation of the number of people with Down syndrome in Europe. Eur J Hum Genet. 2021 Mar;29(3):402–410. PMID: 33130823. PMCID: PMC7940428. https://doi.org/10.1038/s41431-020-00748-y
  27. Zelinska N, Shevchenko I, Globa E. Nationwide Study of Turner Syndrome in Ukrainian Children: Prevalence, Genetic Variants and Phenotypic Features. J Clin Res Pediatr Endocrinol. 2018 Jul 31;10(3):256–263. PMID: 29537378. PMCID: PMC6083464. https://doi.org/10.4274/jcrpe.5119
  28. Berglund A, Stochholm K, Gravholt CH. The epidemiology of sex chromosome abnormalities. Am J Med Genet C Semin Med Genet. 2020 Jun;184(2):202–215. PMID: 32506765. https://doi.org/10.1002/ajmg.c.31805.
  29. Yakoreva M, Kahre T, Žordania R, Reinson K, Teek R, Tillmann V, et al. A retrospective analysis of the prevalence of imprinting disorders in Estonia from 1998 to 2016. Eur J Hum Genet. 2019 Nov;27(11): 1649–1658. PMID: 31186545. PMCID: PMC6871525. https://doi.org/10.1038/s41431-019-0446-x
  30. Toral-López J, González-Huerta LM, Cuevas-Covarrubias SA. X linked recessive ichthyosis: Current concepts. World J Dermatol. 2015 Aug 2:4(3):129–134. https://doi.org/10.5314/wjd.v4.i3.129
  31. Traupe H, Fisher J, Oji V. Nonsyndromic types of ichthyoses – an update. J Dtsch Dermatol Ges. 2014 Feb;12(2):109–121. PMID: 24119255. https://doi.org/10.1111/ddg.12229
  32. Fedota OM, Roshcheniuk LV, Sadovnychenko IO, Gontar JV, Merenkova IM, Vorontsov VM, Ryzhko PP. Genetic Study of X-Linked Recessive Ichthyosis in Eastern Ukraine. Cytol Genet. 2021 Feb 5:55(1):47–52. https://doi.org/10.3103/S0095452721010072
  33. Cañueto J, Ciria S, Hernández-Martín A, Unamuno P, González-Sarmiento R. Analysis of the STS gene in 40 patients with recessive X-linked ichthyosis: a high frequency of partial deletions in a Spanish population. J Eur Acad Dermatol Venereol. 2010 Oct;24(10):1226−1229. PMID: 20236202. https://doi.org/10.1111/j.1468-3083.2010.03612.x
  34. Sahoo T, Dzidic N, Strecker MN, Commander S, Travis MK, Doherty C, et al. Comprehensive genetic analysis of pregnancy loss by chromosomal microarrays: outcomes, benefits, and challenges. Genet Med. 2017 Jan;19(1):83–89. PMID: 27337029. doi:10.1038/gim.2016.69
  35. O'Neill ID. Homozygosity for constitutional chromosomal rearrangements: a systematic review with reference to origin, ascertainment and phenotype. J Hum Genet. 2010 Sep;55(9):559–564. PMID: 20574425. https://doi.org/10.1038/jhg.2010.80
  36. Ray A, Oliver TR, Halder P, Pal U, Sarkar S, Dutta S, et al. Risk of Down syndrome birth: Consanguineous marriage is associated with maternal meiosis-II nondisjunction at younger age and without any detectable recombination error. Am J Med Genet A. 2018 Nov;176(11):2342–2349. PMID: 30240118. https://doi.org/10.1002/ajmg.a.40511
  37. Campbell SA, Uhlmann WR, Duquette D, Johnson MP, Evans MI. Pregnancy outcome when both members of a couple have balanced translocations. Obstet Gynecol. 1995 May;85(5pt2):844–846. PMID: 7724133. https://doi.org/10.1016/0029-7844(94)00246-a
  38. Stefansson H, Helgason A, Thorleifsson G, Steinthorsdottir V, Masson G, Barnard J, et al. A common inversion under selection in Europeans. Nat Genet. 2005 Feb;37(2):129–137. PMID: 15654335. https://doi.org/10.1038/ng1508
  39. Nakka P, Smith SP, O’Donnell-Luria AH, McManus KF, 23andMe Research Team, Mountain JL, et al. Characterization of Prevalence and Health Consequences of Uniparental Disomy in Four Million Individuals from the General Population. Am J Hum Genet. 2019 Nov;105(5):921–932. PMID: 31607426. PMCID: PMC6848996. https://doi.org/10.1016/j.ajhg.2019.09.016
  40. Halder P, Pal U, Ganguly A, Ghosh P, Ray A, Sarkar S, et al. Understanding etiology of chromosome 21 nondisjunction from gene × environment models. Sci Rep. 2021 Nov 17;11(1):22390. PMID: 34789805. PMCID: PMC8599692. https://doi.org/10.1038/s41598-021-01672-x
  41. Ben Khelifa M, Ghieh F, Boudjenah R, Hue C, Fauvert D, Dard R, et al. A MEI1 homozygous missense mutation associated with meiotic arrest in a consanguineous family. Hum Reprod. 2018 Jun 1;33(6):1034–1037. PMID: 29659827. https://doi.org/10.1093/humrep/dey073
  42. Husquin LT, Rotival M, Fagny M, Quach H, Zidane N, McEwen LM, et al. Exploring the genetic basis of human population differences in DNA methylation and their causal impact on immune gene regulation. Genome Biol. Dec 18;19(1):222. PMID: 30563547. PMCID: PMC6299574. https://doi.org/10.1186/s13059-018-1601-3
  43. Bondarieva A, Raveendran K, Telychko V, Rao HBDP, Ravindranathan R, Zorzompokou C, et al. Proline-rich protein PRR19 functions with cyclin-like CNTD1 to promote meiotic crossing over in mouse. Nat Commun. 2020 Jun 18;11(1):3101. PMID: 32555348. PMCID: PMC7303132. https://doi.org/10.1038/s41467-020-16885-3